Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIPFNAPPVVGTELDYMQSAMGSGKLCGDGGFTRRCQQWLEQRF----GSAKVLLTPSCTASLEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDVRPDTMNIDETLIEAAITDKTRVIVPVHYAGVACEMDTIMALAKKHNLFVVEDAAQGVMSTYKGRALGTIGHIGCFSFHETKNYTAGGEGGATLINDKALIERAEIIREKGTNRSQFFRGQVDKYTWRDIGSSYLMSDLQAAYLWAQLEAADRINQQRLALWQNYYDALAPLAKAGRIELPSIPDGCVQNAHMFYIKLRDID---DRSALINFLKEAEIMAVFHYIPLHGCP-AGEHFGEFHGEDRYTTKESERLLRLPLFYNLSPVNQRTVIATLLNYFS |
| 1MDO Chain:A ((10-379)) | FLPFSRPAMGAEELAAVKTVLDSGWIT-----TGPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITPQTKAIIPVHYAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGRHIGARG-TAIFSFHAIKNITC-AEGGIVVTDNPQFADKLRSLKFHGLGVD--------QAEVLAPGYKYNLPDLNAAIALAQLQKLDALNARRAAIAAQYHQAMADL-PFQPLSLPSWEH--IHAWHLFIIRVDEARCGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPD--TEWNSERICSLPLFPDMTESDFDRVITAL----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1MDO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -232859 for 3079 contacts (-75.6/contact) +
2D Compatibility (PS) -38833 + (NN) -19786 + (LL) 472
1D Compatibility (HY) -20400 + (ID) 6300
Total energy: -317706.0 ( -103.18 by residue)
QMean score : 0.554
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