Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
RKVDYSTFLQEVNNDQVREARINGREINVTKKDSNRYTTYIPVQDPKLLDNLLTKNVKVVGE
1PIM Chain:A ((2-36))
----YTTFSQ-TKNDQLKEPMFFGQPVNVARYDQQKYDIF----------------------
General information:
TITO was launched using:
RESULT:
Template:
1PIM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 13815 for 146 contacts (94.6/contact) +
2D Compatibility (PS) -3496 + (NN) 150 + (LL) 1764
1D Compatibility (HY) -2400 + (ID) 650
Total energy: 9183.0 ( 62.90 by residue)
QMean score : -0.017
(partial model without unconserved sides chains):
PDB file :
Tito_1PIM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PIM-query.scw
PDB file :
Tito_Scwrl_1PIM.pdb
: