Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | AMIPLFKVAVSPTALDRVAEVFASGYLGQ-GPRVAEFESALAARLGNPRVVSVHSGTSGLCLALRLLDAPEERDEVLSTPLTFEATNWAILADGRRITWVDVDPATLTMDLDDLERKISPATRAIIVVHWTGYPVDLDRLAGILDRAEREHGFRPAVIEDCAHAWGASYRGVPLGSHGNMCVFSF--QALHLTCGDGGLLTLPGDELHERAMLRRFYGIDRTADRLRGAYDVAEWGLKWHMTDLNAAIGLANLETVDEQLRLHRENAAFYDKELTGV------PGLELLQRSPDREGSFYVYDVKVDD-----RPAFHRKMEAAGIMAGLVSRRNDEHSCVAHLRT-SLPGLDSVYDRMVSLPVGWWLTEQDREHVVATIRSGW |
| 3DR4 Chain:A ((40-386)) | ---------------DYVLECMDTTWISSVGRFIVEFEKAFADYCGVKHAIACNNGTTALHLALVAM-GIGPGDEVIVPSLTYIASANSVTYCGATPVLVDNDPRTFNLDAAKLEALITPRTKAIMPVHLYGQICDMDP---ILEVARRHNLL---VIEDAAEAVGATYRGKKSGSLGDCATFSFFGNAI-ITTGEGGMITTNDDDLAAKMRLLRGQGMDPNR-----RYWFPIVGFNYRMTNIQAAIGLAQLERVDEHLAARERVVGWYEQKLARLGNRVTKPHVALTGRH-----VFWMYTVRLGEGLSTTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAAL---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3DR4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -208391 for 2979 contacts (-70.0/contact) +
2D Compatibility (PS) -36482 + (NN) -19733 + (LL) 1740
1D Compatibility (HY) -22400 + (ID) 5800
Total energy: -291066.0 ( -97.71 by residue)
QMean score : 0.408
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