Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GFDPEKAQCCLVENGQILTHGSGGKGYGLASTGVTSGCYQWKFYIVKENRGNEGTC-VGVSRWPVHDFNHRT----TSDMWLYRAYSGNLYHNGEQTLTLS---------SFTQGDFITCVLDMEARTISFGKNGEEPKLAFEDVDAAELYPCVMFYSSNPGEKVKICDMQMR
2FNJ Chain:A ((94-217))
------------------------------KVGLTKGLHIWEIYWPTRQRGTHAVVGVCTADAPLHSVGYQSLVGSTEQSWGWDLGRNKLYHDSKNCAGVTYPAILKNDEAFLVPDKFLVALDMDEGTLSFIVDQQYLGIAFRGLRGKKLYPIV-------------------
General information:
TITO was launched using:
RESULT:
Template:
2FNJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57156 for 700 contacts (-81.7/contact) +
2D Compatibility (PS) -12009 + (NN) -4810 + (LL) 1920
1D Compatibility (HY) -7600 + (ID) 1450
Total energy: -81105.0 ( -115.86 by residue)
QMean score : 0.286
(partial model without unconserved sides chains):
PDB file :
Tito_2FNJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FNJ-query.scw
PDB file :
Tito_Scwrl_2FNJ.pdb
: