Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGDHAWSFLKDFLAGGVAAAVSKTAVAPIERVKLLLQVQ-HASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQLFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADV--GKGAAQREFHGLGDCIIKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIFVSWMIAQSVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGAKAFFKGAWSNVLRGMGGAFVLVLYDEIKKYV |
4C9Q Chain:A ((26-313)) | ------NFAINFLMGGVSAAIAKTAASPIERVKILIQNQDEMIKQGTLDKKYSGIVDCFKRTAKQEGLISFWRGNTANVIRYFPTQALNFAFKDKIKLMF--GFKKE-GYGKWFAGNLASGGAAGALSLLFVYSLDFARTRLAADAKS-----ARQFNGLTDVYKKTLKSDGIAGLYRGFMPSVVGIVVYRGLYFGMFDSLKPL--------FLASFLLGWVVTTGASTCSYPLDTVRRRMMMTSGQA---VKYNGAIDCLKKIVASEGVGSLFKGCGANILRSVAGAGVISMYDQLQMIL |
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General information:
TITO was launched using:
| RESULT:
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Template: 4C9Q.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -92815 for 2036 contacts (-45.6/contact) +
2D Compatibility (PS) -27625 + (NN) 3659 + (LL) 316
1D Compatibility (HY) -28400 + (ID) 7550
Total energy: -152415.0 ( -74.86 by residue)
QMean score : 0.221
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