Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTDAAVSFAKDFLAGGVAAAISKTAVAPIERVKLLLQVQ-HASKQITADKQYKGIIDCVVRIPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKRTQFWLYFAGNLASGGAAGATSLCFVYPLDFARTRLAAD-VGKAGAEREFRGLGDCLVKIYKSDGIKGLYQGFNVSVQGIIIYRAAYFGIYDTAKGMLPDPKNTHIVISWMIAQTVTAVAGLTSYPFDTVRRRMMMQSGRKGTDIMYTGTLDCWRKIARDEGGKAFFKGAWSNVLRGMGGAFVLVLYDEIKKYT |
| 4C9H Chain:A ((22-309)) | ------NFLIDFLMGGVSAAVAKTAASPIERVKLLIQNQDEMLKQGTLDRKYAGILDCFKRTATQEGVISFWRGNTANVIRYFPTQALNFAFKDKIKAMF--GFKKEEGYAKWFAGNLASGGAAGALSLLFVYSLDYARTRLAADS------ARQFNGLIDVYKKTLKSDGVAGLYRGFLPSVVGIVVYRGLYFGMYDSLK-----------LASFLLGWVVTTGASTCSYPLDTVRRRMMMTSGQA---VKYDGAFDCLRKIVAAEGVGSLFKGCGANILRGVAGAGVISMYDQLQMIL |
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General information:
TITO was launched using:
| RESULT:
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Template: 4C9H.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -79791 for 1999 contacts (-39.9/contact) +
2D Compatibility (PS) -27487 + (NN) 2355 + (LL) 812
1D Compatibility (HY) -27600 + (ID) 7850
Total energy: -139561.0 ( -69.82 by residue)
QMean score : 0.210
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