Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKSGPGIQAAIDLTAGAAGGTACVLTGQ---PFDTIKVKMQ--------TFPDLYKGLTDCFLKTYAQVGLRGFYKGTGPALMAYVAENSVLFMCYGFCQQFVRKVAGMDKQAKLSDLQTAAAGSFAS--AFAALALC---PTELVKCRLQTMYEMEMSGKIAKSHNTIWSVVKGILKKDGPLGFYHGLSSTLLQEVPGYFFFFGGYELSRSFFASGRSKDELGPVHLMLSGGVAGICLW---LVVFPVDCIKSRIQVLS-MYGKQAGFIGTL---LSVVRNEGIVALYSGLKATMIRAIPANGALFVAYEYSRKMMMKQLEAY |
1OKC Chain:A ((13-281)) | -----------------AGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIF--LGGVDRHKQ---FWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVG---KGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKN------VHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFVLVLYDEI------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1OKC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -90581 for 1667 contacts (-54.3/contact) +
2D Compatibility (PS) -24901 + (NN) -52 + (LL) 2384
1D Compatibility (HY) -12400 + (ID) 3000
Total energy: -128550.0 ( -77.11 by residue)
QMean score : 0.161
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