Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAFQDLLGHAGDLWRFQILQTVFLSIFAVATYLHFMLENFTAFIPGHRCWVHILDNDTVSDNDTGALSQDALLRISIPLDSNMRPEKCRRFVHPQWQLLHLNGTFPNTSDADMEPCVDGWVYDRISFSSTIVTEWDLVCDSQSLTSVAKFVFMAGMMVGGILGGHLSDRFGRRFVLRWCYLQVAIVGTCAA---------------------LAPTFLIYCSLRFLSGIAAMSLITNTIMLIAEWATHR-------FQAMGITLGM----CPSGIAFMTLAGLA--FAIRDWHILQLVVSVPYFVIFLTSSWLLESARWLIINNKPEEGLKELRKAAHRSGMKNARDTLTLEILKSTMKKELEAAQKKKPSLCEMLHMPNICKRISLLSFTRFA--NFMAYFGLNLHVQHLGNNVFLLQTLFGAVILLANCV-APWALKYMNRRASQMLLMFLLAICL--LAIIFVPQEMQTLREVLATLGLGASALA-NTLAFAHGNEVIPTIIRARAMGINATFANIAGALA----PLM----MILSVYSPPLPWIIYGVFPFISG-FAFLLLPETRNKPLFDTIQDEKNERKDPREPKQEDPRVEVTQF |
| 4JA4 Chain:A ((67-479)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------GCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIY---RIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVN--YFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLM----QEQAEGILRKI-----MGNTLATQAVQ----EIKHSLDHG---------MFGVGVIVIGVMLSIFQQFVGINVVLYYAPEV----------LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSW------NGFSYWIYGCMGVLAALFMWKFVPETKGKTL-----EELEALWE---------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4JA4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -210982 for 2452 contacts (-86.0/contact) +
2D Compatibility (PS) -34599 + (NN) -9454 + (LL) 14928
1D Compatibility (HY) -30000 + (ID) 4750
Total energy: -274857.0 ( -112.10 by residue)
QMean score : 0.097
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