Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEVEEAFQAVGEMGIYQMYLCFLLAVLLQLYVATEAILIALVGATPSYHWDLAELLPNQSHGNQSAGEDQAFGDWLLTANGSEIHKHVHFSSSFTSIASEWFLIANRSYKVSAASSFFFSGVFVGVISFGQLSDRFGRKKVYLTGFALDILFAIANGFSPSYEFFAVTRFLVGMMNGGMSLVAFVLLNECVGTAYWALAGSIGGLFFAVGIAQYALLGYFIRSWRTLAILVNLQGTVVFLLSLF-IPESPRWLYSQGRLSEAEEALYLIAKRNRKLKCTFSLTHPANRSCRETGSFLDLFRYRVLLGHTLILMFIWFV-CSLVYYGLTLSAGDLGGSIYANL---ALSGLIEIPSYPLCIYLINQKWFGRKRTLSAFLCLGGLACLIVMFLPEKKDTGVFAVVNSHSLSLLGKLTISAAF-----NIVYIYTSELYPTVIRNVGLGTCSMFSRVGGIIAPFIPSLKYVQWSLPFIVFGATGLTSGLLSLLLPETLNSPLLETFSDLQVYSYRRLGEEALSLQALDPQQCVDKESSLGSESEEEEEFYDADEETQMIK |
| 4JA4 Chain:A ((211-408)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LLFLMLLYTVPESPRWLM----QEQAEGILRKIMGNTLATQAVQEIKHSLDHG---------MFGVGVIVIGVMLSIFQQFVGINVVLYYAPEV-----------LLQTIIVGVINLTFTVLAIMTVDK--FGRK----PLQIIGALGMAIGMF----SLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWE----------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4JA4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -75709 for 940 contacts (-80.5/contact) +
2D Compatibility (PS) -16420 + (NN) 1111 + (LL) 22804
1D Compatibility (HY) -17200 + (ID) 2450
Total energy: -87864.0 ( -93.47 by residue)
QMean score : 0.045
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