Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MVGFKATDVPPTAT---VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGPVRATASAQYRGVMGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAS---IGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVNAYKTIAREEGFRGLWKGTSPNVARNAIVNCAELVTYDLIKDALLKANLMTDDLPCHFTSAFGAGFCTTVIAS----PVDVVKTRYMNSALGQ---YSSAGHCALTMLQKEGPRAFYKGFMPSFLR--LGSWNVVMFVTYEQLKRALMAACTSREAPF |
| 4C9J Chain:A ((25-316)) | -------------TNFAINFLMGGVSAAIAKTAASPIE--RVKILIQNQDEMIKQGTLDKKYSGIVDCFKRTAKQEGLISFWRGNTANVIRYFPTQALNFAFKDKIKLMFGFKKEEGYGKWFAGNLASGGAAGALSLLFVYSLDFARTRLAADAKS--ARQFNGLTDVYKKTLKSDGIAGLYRGFMPSVVGIVVYRGLYFGMFDSLK--------------------FLLGWVVTTGASTCSYPLDTVRRRMMMTS-GQAVKYNGAIDCLKKIVASEGVGSLFKGCGANILRSVAGAGVISM---YDQLQMILFGKKF------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4C9J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -25697 for 1904 contacts (-13.5/contact) +
2D Compatibility (PS) -26149 + (NN) 847 + (LL) 2900
1D Compatibility (HY) -13200 + (ID) 3500
Total energy: -64799.0 ( -34.03 by residue)
QMean score : 0.094
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