Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKRVIFLLTGLFIWTSVLLAQNVPEGVIGAFKEGNSQELNKYLGDKVDLIIQNKST--HADKRTAEGTMAAFFSNHK-VGSF-NVNHQGKRDESGFVIGILMTANGNFRVNCFFRKVQNKYVIHQIRIDKTDE
3FKA Chain:A ((13-120))
----------------------ALVETYVMAMTRGDRPALERIFFGKASEVGHYEGELLWNSRDAFIAMCEDA--ADAETDPFWAISSVSVQGDIAMLHVENDWAGMRFDDFLTVLLHEGSWRIVSKVYRIR--
General information:
TITO was launched using:
RESULT:
Template:
3FKA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43192 for 702 contacts (-61.5/contact) +
2D Compatibility (PS) -11416 + (NN) -1948 + (LL) 2828
1D Compatibility (HY) -2000 + (ID) 450
Total energy: -56178.0 ( -80.03 by residue)
QMean score : 0.354
(partial model without unconserved sides chains):
PDB file :
Tito_3FKA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FKA-query.scw
PDB file :
Tito_Scwrl_3FKA.pdb
: