Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKYLTIVIALVTLQSAFSQVISETFSSGRLNRKQKIGIYKPEKYTDRQAYPLIVVLNAET----LM----EPVVSMVRYYEQFGEMPKCIVVGVYEPKQEDVTVVEEVGRPINESARFFEFVSAELVPYIQGKYPIA-------------DLKGVIASEEAGFLANYYMLAEKKPTFNMIVSLNPVALPRMGEE-----FSHALA--AGVPNRLFYYMATADVENKVVYDKAIQFERAMRSAP------VHESVEYHFVDFKGSSVNAAKLQGIAQALDMCFDIYKPIGGKEFKTQMETLETGIYEYLENKYNTIYKQLGVKKVPILNDVMATYTAINSSQDWESLKKLAKYVESNGYLKTAMPNFFLAEYYEKIGDDKKALKTYQKAYTEPNIDFITGDLINERITHLQATKRKSKHTKVIEPIEPTEEVAPAQEEQNPTDESNQN |
| 1GKL Chain:A ((42-272)) | ---------------------VKETYTGI--NGTKSLNVYLPYGYDPNKKYNIFYLMHGGGENENTIFSNDVKLQNILDHAIMNGELEPLIVVTPTFNG------------GNCTAQNFYQEFRQNVIPFVESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTT-WYVMVNCLDYVAYFMPLSGDYWYGNSPQDKANSIAEAINRSGLSKREYFVFAATGSEDIA--YANMNPQIEAMKALPHFDYTSDFSKGNFYFLVAPGATHWW----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GKL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -103292 for 1531 contacts (-67.5/contact) +
2D Compatibility (PS) -21638 + (NN) -12176 + (LL) 16564
1D Compatibility (HY) -11200 + (ID) 1500
Total energy: -133242.0 ( -87.03 by residue)
QMean score : 0.192
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