Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVSSNGGAIKAVIYDCDGVMFDSFEANLAFYQRIMEMMGRPRLSRDNEEQMRILHTYANREVLAHFFPS--PGDWEEAVRCAGAIDYRELVPLMIMEEGFREALDTLKG-RVGLGVCTNRSTS-MDMVLRLFSLDSYFSIVMTASRVTNPKPHPEPLLKVLEHFGIGPREALFVGDSEVDRLSAEAAGVPFVAYKAPL---------PAAYRMEHHREIIDLLG
3D6J Chain:A ((5-214))
--------KYTVYLFDFDYTLADSSRGIVTCFRSVLERHGYTGITD---DMIKRTIGKTLEESFSILTGITDADQLESFRQEYSKEADIYMNANTILFPDTLPTLTHLKKQGIRIGIISTKYRFRILSFLRNHMPDDWFDIIIGGEDVTHHKPDPEGLLLAIDRLKACPEEVLYIGDSTVDAGTAAAAGVSFTGVTSGMTTAQEFQAYPYDRIISTLGQLI----
General information:
TITO was launched using:
RESULT:
Template:
3D6J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -136999 for 1637 contacts (-83.7/contact) +
2D Compatibility (PS) -21607 + (NN) -14889 + (LL) 116
1D Compatibility (HY) -8800 + (ID) 2100
Total energy: -184279.0 ( -112.57 by residue)
QMean score : 0.406
(partial model without unconserved sides chains):
PDB file :
Tito_3D6J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3D6J-query.scw
PDB file :
Tito_Scwrl_3D6J.pdb
: