Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKRVIFLLTGLFIWTSVLLAQNVPEGVIGAFKEGNSQELNKYLGDKVDLIIQNKS-THADKRTAEGTMAAFFSNHKVGSFNVNHQGKRDESGFVIGILMT--ANG--NFRVNCFFRKVQNKYVIHQIRIDKTDE
2K54 Chain:A ((7-110))
----------------------LPVQKQLEAYNARDIDAFMAWWADDCQYYAFPATLLAGNAAEIRVRHIERFK-EPDLYGELLTRVIVGNVVIDHETVTRNFPEGKGEVDVACIYEVENGR--IAKAW------
General information:
TITO was launched using:
RESULT:
Template:
2K54.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31921 for 656 contacts (-48.7/contact) +
2D Compatibility (PS) -10748 + (NN) -1227 + (LL) 3172
1D Compatibility (HY) -2000 + (ID) 350
Total energy: -43074.0 ( -65.66 by residue)
QMean score : 0.322
(partial model without unconserved sides chains):
PDB file :
Tito_2K54.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2K54-query.scw
PDB file :
Tito_Scwrl_2K54.pdb
: