Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVSSNGGAIKAVIYDCDGVMFDSFEANLAFYQRIMEM----MGRPRLSRDNEEQMR----ILHT----YANRE--------VLAHFFPS---PGDWEEAVRCAGAIDYRELVPLMIMEEGFREALDTLKGRVGLGVCTNRSTS-MDMVLRLFSLDSYFSIVMTASRVTNPKPHPEPLLKVLEHFGIGPREALFVGDSE-VDRLSAEAAGVP-FVAYKAP--------LPAAYRMEHHREIIDLLG
2GFH Chain:A ((11-249))
--HHMGLSRVRAVFFDLDNTLIDTAGASRRGMLEVIKLLQSKYHYKE-E--AEIICDKVQVKLSKECFH-CITDVRTSHWEEAIQETKGGADNRKLAEECYFLW----KSTRLQHMILADDVKAMLTELRKEVRLLLLTNGDRQTQREKIEACACQSYFDAIVIGGEQKEEKPAPSIFYHCCDLLGVQPGDCVMVGDTLETDIQGGLNAGLKATVWINKSGRVPLTSSPMPHYMVSSVLELPALL-
General information:
TITO was launched using:
RESULT:
Template:
2GFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -135139 for 1525 contacts (-88.6/contact) +
2D Compatibility (PS) -21513 + (NN) -12691 + (LL) 572
1D Compatibility (HY) -11200 + (ID) 1850
Total energy: -181821.0 ( -119.23 by residue)
QMean score : 0.438
(partial model without unconserved sides chains):
PDB file :
Tito_2GFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GFH-query.scw
PDB file :
Tito_Scwrl_2GFH.pdb
: