Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGPVAGNYVHDFTANGTSSSFYTIAGNLSTSKGTATYNGKTLTQCLKMETA-TSISFTAPSAGKLTLVFAEAAA-TAKVDGNKVT-ASNGIITVDLAQGAHTITKADACNLFYMEYAAHHHHHH
3W5M Chain:A ((971-1032))
---------------------------------------------WQQRSGGFVLTCSVPPNTTAEVWIPADHPDRVQHTHGTFVRAEDGCAVFEVGSGSHRFTVKL-----------------
General information:
TITO was launched using:
RESULT:
Template:
3W5M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24263 for 366 contacts (-66.3/contact) +
2D Compatibility (PS) -6155 + (NN) 1348 + (LL) 2796
1D Compatibility (HY) -2800 + (ID) 300
Total energy: -29374.0 ( -80.26 by residue)
QMean score : 0.177
(partial model without unconserved sides chains):
PDB file :
Tito_3W5M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3W5M-query.scw
PDB file :
Tito_Scwrl_3W5M.pdb
: