Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIKPNLRPKLGSSALIAFLSLYSSLVLNYAFFAKVVELHPFNGTGADIFLYTMPVVLFFLSNFVFHVIALPFVHKVLIPLILVISAAVSYQEIFFNIYFNKSMLNNVLQTTAAESARLITPGYVLWIVCLGVLPALAYIAVKVKYRVWYKELLTRLVLAAVSFLCALGIAMLQYQDYASFFRNNKSVTHLIVPSNFIGAGVSKYKDWKRSNIPYTQLDMAVVQNRPAGSLRRFVVLVVGETTRAANWGLNGYSRQTTPLL---AARGDEIVNFPQVRSCG-TSTAHSLPCMFSTFDR-T-------DYDEIKA---------------EHQDNLLDIVQRAGVEV---TWLENDSGCKGVCGKVPNTDVTSLNLPEYCRNGECLDNILLTKFDEVLNKN--DKDAVLILHTIGSHGPTYYERYTEAERKFTPTCDTNEINKCTRATLVNTYDNTVLYVDQFIDKVIRKLENRDDL-ESVVHYVSDHGESLGENGMYLHAAPYAIAPSGQTHIPMVMWFSKAFRQHGGIDFQCLKQKAAENEYSHDHYFSTVLGLMDISNSQTYRKEMDILAACRRPR |
| 3NKQ Chain:A ((125-328)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FVRPPL-IIFSVDGFRASYMKKGSK---VMPNIEKLRSCG---THAPYMRPVYPTKTFPNLYTLATGLYPESHGIVGNSMYDPVFDATFHLRGREKFNHRWWGGQPLWITATKQGVRAGTFFWS----------------------------VSIP-HERRILTILQWLSLPDNERPSVYAFYSEQPDFSG--HKY-------GPF--G------------PEMTNPLREIDKTVGQLMDGLKQLKLHRCVNVIFVGDHGMED--------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3NKQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -52779 for 1158 contacts (-45.6/contact) +
2D Compatibility (PS) -18576 + (NN) -6397 + (LL) 29080
1D Compatibility (HY) -4400 + (ID) 1350
Total energy: -54422.0 ( -47.00 by residue)
QMean score : 0.083
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