Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKRVIFLLTGLFIWTSVLLAQNVPEGVIGAFKEGNSQELNKYLGDKVDLIIQNKSTHA-DKRTAEGTMAAFFSNHKVGSFNVNHQGKRDESGFVIGILMT-ANG-------NFRVNCFFRKVQNKYVIHQIRIDKTDE
3FF2 Chain:A ((6-113))
----------------------ETAKAMIAAYNAQDVDTYVSYMTDDACEANYRGDVVREGKEGTRSGLAAAFARWPQNHAEIKDAQQVGTYVLMREHVTRGPATDGSPLVEPFDVVAVYSFEGDK--CSRV-------
General information:
TITO was launched using:
RESULT:
Template:
3FF2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30040 for 685 contacts (-43.9/contact) +
2D Compatibility (PS) -10333 + (NN) 505 + (LL) 3352
1D Compatibility (HY) -2000 + (ID) 550
Total energy: -39066.0 ( -57.03 by residue)
QMean score : 0.325
(partial model without unconserved sides chains):
PDB file :
Tito_3FF2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FF2-query.scw
PDB file :
Tito_Scwrl_3FF2.pdb
: