Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKYLTIVIALVTLQSAFSQVISETFSSGRLNRKQKIGIYKPEKYTDRQAYPLIVVLNAE--T----LMEPVVSMVRYYEQFGEMPKCIVVGVYEPKQEDVTVVEEVGRPINESARFFEFVSAELVPYIQGKYPIADLK-GVIASEEAGFLANYYMLAEKKPTFNMIVSLNPVALPRMGEE---FSH------------A-----------------LAAGVPNRLFYYM-------------ATADVENKVVYDKAIQFERAMRSAPVHESVE-YHFVDFKGSSVNAAKL-QGIAQALDMCFDIYKPIGGKEFKTQMETLETGIYEYLENKYNTIYKQLGVKKVPILNDVMATYTAINSSQDWESLKKLAKYVESNGYLKTAMPNFFLAEYYEKIGDDKKALKTYQKAYTEPNIDFITGDLINERITHLQATKRKSKHTKVIEPIEPTEEVAPAQEEQNPTDESNQN |
| 1R88 Chain:A ((36-298)) | --------------------YENLMVPSPSMG--RDIPVAFLAG----G-PHAVYLLDAFNAGPDVSNWVTAGNAMNTLAGK----GISVVAPAGGAYSMYTN-----WEQDGSKQWDTFLSAELPDWLAANRGLAPGGHAAVGAAQGGYGA-MALAAFHPDRFGFAGSMSGFLYPSNTTTNGAIAAGMQQFGGVDTNGMWGAPQLGRWKWHDPWVHASLLAQNNTRVWVWSPTNPGASDPAAMIGQAA--EAMGNSRMFYNQYRSV----GGHNGHFDFPASGDNGWGSWAPQLGAMSGDIVGAI------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1R88.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -189419 for 1767 contacts (-107.2/contact) +
2D Compatibility (PS) -22255 + (NN) -10461 + (LL) 14028
1D Compatibility (HY) -1200 + (ID) 1300
Total energy: -210607.0 ( -119.19 by residue)
QMean score : 0.190
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