Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDATPNAVELTVDNAW--FIAETIGAGTFPWVLAI--TMPYSDAAQRGAFVDRQRDELTRMGLLSPQGVINPAVADWIKVVCFPDRWLDLRYVGPASADGACELLRGIVALRTGTGKTSNKTGNGVVALRNAQLVTFTAMDIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGARADERLRSGVPLGE----VVDYLGIPASARPVVESVFSGPRSYVEIVAGCNRDGRHTTTEVGLSIVDTSAGRVLVSPSRAFDGEWVSTFSPGTPFAIAVAIQTLTACLPDGQWFPGQRVSRDFSTQSS |
| 4DAP Chain:A ((1-234)) | MEFSPPLQRATLIQRYKRFLADVITPDGRELTLHCPNTGAMTGCATPGDTVWYSTSDNTKRKYPHTWELTQSQSGAFICV----NTLWANRLTKEAILNESISELSGYSSLKSEVKYGAS-------------RIDFMLQADSRPDCYIEVKSVTLAENEQGYF-----PDAVTERGQKHLRELMSVAAEGQRAVIFFAVLHSAITRFSPARHIDEKYAQLLSEAQQRG--------------------------------------------VEILAYKAEISA----EGMALKKSLPVTL- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4DAP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -92440 for 1758 contacts (-52.6/contact) +
2D Compatibility (PS) -23579 + (NN) -3609 + (LL) 3720
1D Compatibility (HY) -9200 + (ID) 1950
Total energy: -127058.0 ( -72.27 by residue)
QMean score : 0.144
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