Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | CSFGIENTAGGSAVFHNYTRGASNSVTKNNQLLGGYGSRPWLGSTYTEHSNAALHFLGAGDTSATNHGGWIRLLVTPKGKTISDRVPAFRLSDNGDLWLVPDGAMHSDLGLVRSIETLNAAVPRFNAPSIQDGRGLKIVAPQAPEIDLIAPRGSGASAPAIRAMWCDGSLADTTRY-IGATQPG-STFYIGASGHDGEKFDSMRGSVAIKSAGGWGPTS-TPTQVVLETCE-SGSISRLPRWGVDHNGTLMPMADNRYNLGWGSGRVKQVYAVNGTINTSDARLKNDVRAMSDPETEAAKAIAKEIGFWTWKEQADMNDIREHCGLTVQRAIEIMESFGLDPFKYGF-ICYDKWDEHTVVSEYGPANEDGTENPIYKTIPAGDHYSFRLEELNLFIAKGFEARLSAIEDKLGM |
3GW4 Chain:A ((8-199)) | --------------------------------------------------------------------------------------------------------------------------------------------------------DYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVE--------RMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQH----WLRARDIFAELEDSEAVNELMTRLNGLEH--------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GW4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 39402 for 1341 contacts (29.4/contact) +
2D Compatibility (PS) -18505 + (NN) 5221 + (LL) 10420
1D Compatibility (HY) 10400 + (ID) 600
Total energy: 46338.0 ( 34.55 by residue)
QMean score : 0.036
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