Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
RKVDYSTFLQEVNNDQVREARINGREINVTKKDSNRYTTYIPVQDPKLLDNLLTKNVKVVGE
1PIU Chain:A ((2-36))
----YTTFSQ-TKNDQLKEPMFFGQPVNVARYDQQKYDIF----------------------
General information:
TITO was launched using:
RESULT:
Template:
1PIU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 11909 for 143 contacts (83.3/contact) +
2D Compatibility (PS) -3496 + (NN) 150 + (LL) 1764
1D Compatibility (HY) -2400 + (ID) 650
Total energy: 7277.0 ( 50.89 by residue)
QMean score : 0.003
(partial model without unconserved sides chains):
PDB file :
Tito_1PIU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PIU-query.scw
PDB file :
Tito_Scwrl_1PIU.pdb
: