Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | TMEELLTSLQKKCGTECEEAHRQLVCALNGLAGIHIIKGEYALAAELYREVLRSSEEHKGKLKTDSLQRLHATHNLMELLIARHPGIPPTLRDGRLEEEAKQLREHYMSKCNTEVAEAQQALYPVQQTIHELQRKIHSNSPWWLNVIHRAIEFTIDEELVQRVRNEITSNYKQQTGKLSMSEKFRDCRGLQFLLTTQMEELNKCQKLVREAVKNLEGPPSRNVIESATVCHLRPARLPLNCCVFCKADELFTEYESKLFSNTVKGQTAIFEEMIEDEEGLVDDRAPTTTRGLWAISETERSMKAILSFAKSHRFDVEFVDEGSTSMDLFEAWKKEYKLLHEYWMALRNRVSAVDELAMATERLRVRDPREPKPNPPVLHIIEPHEVEQNRIKLLNDKAVATSQLQKKLGQLLYLTNLEK |
1QOY Chain:A ((-4-298)) | -------SMAEIVADKTVEVVKNAIETADGALDLYNKYLDQVIPWQTFDETIKE---------------------------------------------LSRFKQEYSQAASVLVGDIKTLLMDSQDKYFEATQTVYE----WCGVATQLLAAYIL----------------------------------------LFDEYN------EKKASAQKDILIKVLDDGITKLNEAQKSLLVSSQSFNNASGKLLALDSQLTNDFSEKSSYFQSQVDKIRKEAYAGAAAGVVVGPFGLIISYSIAAGVVEGKLIPELKNKLKSVQNFFTTLSNTVKQANKDIDAAKLKLTTEIAAIGEIKTETETTRFYV-----------------DYDDLMLSLLKEAAKKMINTCNEYQKRHGKKTLF- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1QOY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 26772 for 2263 contacts (11.8/contact) +
2D Compatibility (PS) -31486 + (NN) -7097 + (LL) 7708
1D Compatibility (HY) 11600 + (ID) 700
Total energy: 6797.0 ( 3.00 by residue)
QMean score : 0.166
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