Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
FEKCGKRVDRLDQRRSKLRVVGG---HPGNSPWTVSLRNRQGQHFCGGSLVKEQWILTARQCFSSCHMPLTGYEVWLGTLFQNPQHGEPSLQRVPVAKMVCGPSGSQLVLLKLERSVTLNQRVALICLPPEWYVVPPGTKCEIAGWGETKGTGNDTVLNVALLNVISNQECNIKH--RGRVRESEMCTEGLLAPVGACEGDYGGPLACFTHNSWVLEGIIIPNRVCARSRWPAVFTRVSVFVDWIHKVMRLGHHHHHH
1BML Chain:A ((547-789))
--DCGK--PQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRP-SSYKVILGA--HQEVNLEPHVQEIEVSRLFLEPTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDAGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVMR--------
General information:
TITO was launched using:
RESULT:
Template:
1BML.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -154083 for 2027 contacts (-76.0/contact) +
2D Compatibility (PS) -26000 + (NN) -15116 + (LL) 1280
1D Compatibility (HY) -19600 + (ID) 5000
Total energy: -218519.0 ( -107.80 by residue)
QMean score : 0.419
(partial model without unconserved sides chains):
PDB file :
Tito_1BML.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BML-query.scw
PDB file :
Tito_Scwrl_1BML.pdb
: