Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | SNAMPFLPDPGEPSPLKVVIAGAGYVGTCLAVTLAGRGAEVVAVDSDPGTVADLRAGRCRLPEPGLAGAVRDLAATGRLTASTSYDP-VGAADVVIVTVGTPTDAGHEMVTDQLVAACEQIAPRLRAGQLVILKSTVSPGTTRTLVAPLLESGGLVHER----DFGLAFCPERLAEGVALAQ-VRTLPVVVGGCGPRSAAAAERFWRSALGVDVRQV-PSAESAEVVKLATNWWIDANVAIANELARYCAVLGVDVLDV-IGAANTLPKGSSMVNLLLPGVGVGGSCLTKDPWMAWRDGRDRGVPLRTVETARAVNDDMPRHTAAVIADELVKLGR-DRNDTTIAVLGAAFKNDTGDVRNTPVRGVVAALRDSGFRVRIFDPLADPAEIVARFGTAPAASLD--EAVSGAGCLAFLAGHRQFHELDFGALAERVDEPCLVFDGRMHLPPARIRELHRFGFAYRGIGR |
| 3GG2 Chain:A ((3-419)) | ---------------LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQEE---LDKREVLIDFDIASNPEFLKEGNAIDDFMKPDRVVVGVDSDRARELITSLYKPMLLNNFRVLFMDIASAEMTKYAANAMLATRISFMNDVANLCERVGADVSMVRLGIGSDSRIGS---KFLYPGCGYGGSCFPKDVKALIRTAEDNGYRMEVLEAVERVNE----KQKSILFDKFSTYYKGNVQGRCVAIWGLSFKPGTDDMREAPSLVLIEKLLEVGCRVRVYDPVA-MKEAQKRLGDKVEYTTDMYDAVRGAEALFHVTEWKEFRMPDWSALSQAM-AASLVIDGR----------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GG2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -241386 for 3377 contacts (-71.5/contact) +
2D Compatibility (PS) -43709 + (NN) -13224 + (LL) 1332
1D Compatibility (HY) -26400 + (ID) 6200
Total energy: -329587.0 ( -97.60 by residue)
QMean score : 0.443
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