Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDHSHHMGMSYMDSNSTMQPSHHHPTTSASHSHGGGDSSMMMMPMTFYFGFKNVELLFSGLVINTAGEMAGAFVAVFLLAMFYEGLK.IARESLLRKSQVSIRYNSMPVPGPNGTILMETHKTVGQQMLSFPHLLQTVLHIIQVVISYFLMLIFMTYNGYLCIAVAAGAGTGYFLFSWKKAVVVDITEHCH |
2LS2 Chain:A ((2-25)) | ---------------------------------------------------------------NTAGEMAGAFVAVFLLAMFYEGLK-------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2LS2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -9506 for 97 contacts (-98.0/contact) +
2D Compatibility (PS) -2645 + (NN) -2653 + (LL) 11972
1D Compatibility (HY) -4400 + (ID) 1200
Total energy: -8432.0 ( -86.93 by residue)
QMean score : -0.267
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