Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAMHFIFSDTAVLLFDFWSVHSPAGMALSVLVLLLLAVLYEGIKVGKAKLLNQVLVNLP--TSISQQTIAETDGDSAGSDSFPVGRTHHRWYLCHFGQSLIHVIQVVIGYFIMLAVMSYNTWIFLGVVLGSAVGYYLAYPLLSTA
4QIM Chain:A ((169-239))
---------------------------------------------GKTSYFHLLTWSLPFVLTVAILAVAQVDGDSVSGICF-VGYKNYR-YRAGFVLAPIGLVLIVGGYFLIRGVMTLFSIKSNHADLEDNWETLNDNLKVIEK
General information:
TITO was launched using:
RESULT:
Template:
4QIM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9877 for 340 contacts (-29.1/contact) +
2D Compatibility (PS) -7127 + (NN) -797 + (LL) 4840
1D Compatibility (HY) -6400 + (ID) 1100
Total energy: -20461.0 ( -60.18 by residue)
QMean score : 0.010
(partial model without unconserved sides chains):
PDB file :
Tito_4QIM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QIM-query.scw
PDB file :
Tito_Scwrl_4QIM.pdb
: