Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAAATAAAALAAADPPPAMPQAAGAGGPTTRRDFYWLRSFLAGGIAGCCAKTTVAPLDRVKVLLQAHNHHY---------KHLGVFSALRAVPQKEGFLGLYKGNGAMMIRIFPYGAIQFMAFEHYKTLITTKLGISGHVHRLMAGSMAGMTAVICTYPLDMVRVRLAFQVK--GEHSYTGIIHAFKTIYAKEGGFFGFYRGLMPTILGMAPYAGVSFFTFGTLKSVGLSHAPTLLGRPSSDNPNVLVLKTHVNLLCGGVAGAIAQTISYPFDVTRRRMQLGTVLPEFEKCLTMRDTMKYVYGHHGIRKGLYRGLSLNYIRCIPSQAVAFTTYELMKQFFHLN |
2LCK Chain:A ((17-296)) | ---------------------------------------FLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTI-AREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKD-------TLL------KANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRY-MNSALGQYHSAGHCALTMLRKEGP----RAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAA |
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General information:
TITO was launched using:
| RESULT:
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Template: 2LCK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -77367 for 1509 contacts (-51.3/contact) +
2D Compatibility (PS) -26999 + (NN) 10311 + (LL) 2604
1D Compatibility (HY) -10000 + (ID) 3900
Total energy: -105351.0 ( -69.82 by residue)
QMean score : -0.116
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