Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | METVPPAVDLVLGASACCLACVFTNPLEVVKTRLQLQGELQARGTYPRPYHGFIASVAAVARADGLWGLQKGLAAGLLYQGLMNGVRF-YCYSLACQAGLTQQPG------GTVVAGAVAGALG-AFVGSPAYLIKTQLQAQTVAAVAVGHQHNHQTVLGALETIWRQQGLLGLWQGVGGAVPRVMVGSAAQLATFASAKAWVQKQQWLPEDSWLVALAGGMISSIAVVVVMTPFDVVSTRLYNQPVDTAGRGQLYGGLTDCMVKIWRQEGPLALYKGLGPAYLR-LGPHTILSMLFWDELRKLAGRAQHKGT |
| 4C9H Chain:A ((25-309)) | -------IDFLMGGVSAAVAKTAASPIERVKLLIQNQDEMLKQGTLDRKYAGILDCFKRTATQEGVISFWRGNTANVIRYFPTQALNFAFKDKIKAMFGFKKEEGYAKWFAGNLASGGAAGALSLLFVYSLDY-ARTRLAADS--------ARQFNGLIDVYKKTLKSDGVAGLYRGFLPSVVGIVVYRGLYFGMYDSLK--------------LASFLLGWVVTTGASTCSYPLDTVRRRM----MMTSGQAVKYDGAFDCLRKIVAAEGVGSLFKGCGANILRGVAGAGVISM--YDQLQMILFGKKFK-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4C9H.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -83696 for 1916 contacts (-43.7/contact) +
2D Compatibility (PS) -26322 + (NN) -3921 + (LL) 3280
1D Compatibility (HY) -15200 + (ID) 3450
Total energy: -129309.0 ( -67.49 by residue)
QMean score : 0.224
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