Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKMAPQN-ADPESMQVQELSVPLPDPQKAGGAEAENCETISEGSIDRIPMRLWVMHGAVMFGREFCYAMETALVTPILLQIGL-PEQYYSLTWFLSPILG--------LIFTPLIGSASD----------------RCTLSWGRRRPFILALCVGVLFGVALFL------------------------------------NGSAIGLALGDV---------PNRQPIGIVLTVLGVVVLDFSADATEGPIRAYLLD------------VVDSEEQD-MALNIHAFSAGLGGAIGYVLGGLDWTQTFLGSWFRTQNQVLFFFAAIIFTVSVALHLFSIDEEQYSPQQERSAEEPGALDGGEPHGVPAFPDEVQSEHELALDYPDVDIMRSK------SDSALHVPDTALDLEP----ELLFLHDIEPSIFHDASY--------PATPRSTSQELAKTKLPRLA------TFLKEAA---KEDETLLDNHLNEAKVPNGSGSPTKD----------------ALGGYTRVDTKPSATS---------------SSMRRRRHAFRRQASSTFSYYGKLGSHCYRYRRANAVVLIK--PSRSMSD-LYDMQKRQRQHRHRNQSGATTSSGDTESEEGEGETTVRLLW-------LSMLKMP-RELMRLCLCHLLTWFSVIAEAVFYTDFMGQVIFEGDPKAPSNSTAWQAYNAGVKMGCW--------GLVI---YAATGAICSALLQK-----------------YLDNYDLSVRVIYVLGTLGFSVG----TAVMAMFPNVYVAMVTISTMGIVSMSISY----------CPYALLGQYHDIKQYIHHSPGNSKRGF------GIDCAILSCQVYISQILVASALGGVVDAVGT-----VRVIPMVASVGS--FLGF---LTATFLVIYPNVSEEAKEEQKGLSSPLAGEGRAGGNSEKPTVLKLTRKEGLQGPVETESVV------ |
| 4Q71 Chain:A ((3-990)) | MPNIPPPFTAPYAPDDAEIAARLLPASHLSPPQEARIHRTATRLIEAIRKRL---GGVEDMLREFALSTKEGLALMVLAEALLRVPDARTADQFIEDKLGEGDFIHHETKSTAFLVNASAWARVIQPGETPDGTIGRLVKRLGAPAVRTATRQAMRLMGNHFVLGETIEQALERGKPGQKTRYSFDMLGEGARTAADARRYFDAYASAIETIGKAAGNHALPDRPGISVKLSALHPRFEAISRARVMVELVPQLLDLAQRAKAHDLNFTVDAEEADRLELSLDVIAATLAD---PSLKGWDGFGLAIQAYQKRASAVIDYVDALARAHDRKLMVRLV-KGAYWDTEIKRAQERGL------DGYPVFTRKAMTDLNYVACASKLLALRPRIFPQFATHNALTVATVLEMAEGSSGFEFQRLHGMGEALYEQLAKDHADIAYRTYAPVGSHRDLLAYLVRRLLENGANSSFVAQAADYRVPVPALLQRPADAIVRPQAAAHPRIPLPCDLFAPERRNSRGVEFGARTALDQLLTDVKAEIADATPDQAHAAVAAARAGFAGWSRTPAGIRAAALEQAAHLLESRSAHFIALLQREGGKTLDDALSELREAADFCRYYAAQGRKLFGSETAMPGPTGESNALTMRGRGVFVAISPWNFPLAIFLGQVTAALMAGNSVVAKPAEQTPRIAREAVALLHEAGIPKSALYLVTGDGRIGAALTAHPDIAGVVFTGSTEVARSINRALAAKDGPIVPLIAETGGINAMIADATALPEQVADWVVTSAFRSAGQRCSALRLLFVQEDVADRMIEMVAGAARELKIGDPSDVATHVGPVIDVEAKQRLDAHIARMKTEARLHFAGPAPEGCFVAPHIFELTEAGQLTEEVFGPILHVVRYRPENLERVLRAIERTGYGLTLGVHSRIDDSIEAIIDRVQVGNIYVNRNMIGAVVGVQPFGGNGLSGTGPKAGGPHYLARFATEQTVTINTAAA |
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General information:
TITO was launched using:
| RESULT:
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Template: 4Q71.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -236456 for 5985 contacts (-39.5/contact) +
2D Compatibility (PS) -78444 + (NN) -5131 + (LL) 376
1D Compatibility (HY) -9600 + (ID) 7150
Total energy: -336405.0 ( -56.21 by residue)
QMean score : 0.144
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