Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKRVIFLLTGLFIWTSVLLAQNVPEGVIGAFKEGNSQELNKYLGDKVDLIIQNKSTHADKRTAEGTMAAFFS-NHKVGSFNVNH--QG-KRDESGFVIGI--LMTANG-------NFRVNCFFRKVQNKYVIHQIRIDKTDE
4I4K Chain:A ((23-139))
----------------------ALPARIVAAWADHDADRFADVFAEDGTMILPG-LFRKGRENIRTHMAAAFAGPYKGTRVIGSPIDARLLGDGIALLITEGGILAPGETEASGDGAVRASWLAVEQDGQWRLAAYQNSP---
General information:
TITO was launched using:
RESULT:
Template:
4I4K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49414 for 686 contacts (-72.0/contact) +
2D Compatibility (PS) -11457 + (NN) -1043 + (LL) 2840
1D Compatibility (HY) -5600 + (ID) 550
Total energy: -65224.0 ( -95.08 by residue)
QMean score : 0.369
(partial model without unconserved sides chains):
PDB file :
Tito_4I4K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4I4K-query.scw
PDB file :
Tito_Scwrl_4I4K.pdb
: