Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNSRRDFLKKGALAGFSALMIPEIAKAAVKENTSVHAPKINLKKDCVILFQGDSITDCGRDRNSNRCNTMEQFGSGYVLFTATQLLEGKAALQPKIYNRGISGNKVYQ---LRERWEIDCLAFQPDVLSILIGVNDYWHTLTHGYKGTVETYENDLRALLKYTKEKLPNTQIVLCEPFTLRDGAA-IEDSKWYPMFDEFRKSARKLSEEFNTIFVPFQSGFDAAVKLAPARYWSNDGVHPDLPGRQLMANMWMEATGLK
4H08 Chain:A ((18-194))
-------------------------------------------TDLPHVLLIGNSITRG------------------YYGK----VEAALKEKA--YVGR-LSNSKSVGDPALIEELAVVLKNTKFDVIHFNNGLHGFD--------YTEEEYDKSFPKLIKIIRKYAPKAKLIWANTTPVRTGEGMKEFAPITERLNVRNQIALKHINRASIEVNDLWKVVID----HPEYYAGGDGTHPIDAGYSALANQVIKVI---
General information:
TITO was launched using:
RESULT:
Template:
4H08.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110401 for 1375 contacts (-80.3/contact) +
2D Compatibility (PS) -18856 + (NN) -8009 + (LL) 4452
1D Compatibility (HY) -3200 + (ID) 1700
Total energy: -137714.0 ( -100.16 by residue)
QMean score : 0.307
(partial model without unconserved sides chains):
PDB file :
Tito_4H08.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4H08-query.scw
PDB file :
Tito_Scwrl_4H08.pdb
: