Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKRILSLLGVIALFLGVILVSCGNDDDNKNTTGVHKIVVEQSGNTDDFDLNIAFGAANTGGVAKLYNENGEYLGDSYLVNKVTENKISCQTGKEGSMMTCAGSVISTSE-----QAGKKLKISVIAYIDNKEVNRLEKEYITKGSTLVENFSVSTTSVE
1FNF Chain:? ((1142-1235))
------------------------------PLSPPTNLHLEANPDTGV--LTVSWERSTTPDI------------TGYRIT------TTPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVYTVKDDKE-----------SVPISDTI---IPA--
General information:
TITO was launched using:
RESULT:
Template:
1FNF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34111 for 615 contacts (-55.5/contact) +
2D Compatibility (PS) -9885 + (NN) -5306 + (LL) 4520
1D Compatibility (HY) -2000 + (ID) 700
Total energy: -47482.0 ( -77.21 by residue)
QMean score : 0.347
(partial model without unconserved sides chains):
PDB file :
Tito_1FNF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FNF-query.scw
PDB file :
Tito_Scwrl_1FNF.pdb
: