Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMKLHLKYLWIVLVACTLTACMNGGGDLAGKWQLRQYQYADGTSEKVDSVFYNFQKGSFSAICLLKDGGLTTFFGNYSLKGAEISIILLPESVNDKNYDTYFGWPEGKCTFKVEDLSYSSL-RLEYEGTKSIFRKF
2D0G Chain:A ((278-329))
-------------------------------------------------------------------------YNNFSSQGAYES-----QSSPWYNYYTFYTWPDSYASF----LGFNSLPKLNYGNSGSAVR--
General information:
TITO was launched using:
RESULT:
Template:
2D0G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 12286 for 256 contacts (48.0/contact) +
2D Compatibility (PS) -5324 + (NN) -1143 + (LL) 6176
1D Compatibility (HY) -3200 + (ID) 950
Total energy: 7845.0 ( 30.64 by residue)
QMean score : -0.050
(partial model without unconserved sides chains):
PDB file :
Tito_2D0G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2D0G-query.scw
PDB file :
Tito_Scwrl_2D0G.pdb
: