Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---------------------------------------MDATPNAVELTVDNAWFIAETIGAGTFPWVLAITMPYSDAAQR--------------------GAFVDRQRDELTRMGLL--------SPQGVINPAVADWIKVVCFPDRWLDLRYVGPASADGACELLRGIVALRTGTGKTSNKTGNGVVALRNAQL----VTFTAMDIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGARADERLR---SGVPLGEVVDYLGIPASARPVVESVFSGPRSYVEIVAGCNRDGRHTTTEVGLSIVD-----TSAGRVLV---------SPSRAFDGEWVSTFS-----PGTPFAIAVAIQTLTACLPDGQWFPGQRVSRDFSTQSS- |
| 1JS8 Chain:A ((1-390)) | AIIRKNVNSLTPSDIKELRDAMAKVQADTSDNGYQKIASYHGIPLSCHYENGTAYACCQHGMVTFPNWHRLLTKQMEDALVAKGSHVGIPYWDWTTTFANLPVLVTEEKDNSFHHAHIDVANTDTTRSPRAQLFSFFYRQIALALEQTDFCDFEIQFEIGHNAIHSWVGG--SSPYGMSTLHYTSYDPLFYLHHSNTDRIWSVWQALQKYRGLPYNTANCEINKLVKPLKPFNLDTNPNAVTKAHSTGATSFDYHKLGYDYDNLNFHGMTIPELEEHLKEIQHEDRVFAGFLLRTIGQSADVNFDVCTKDGECTFGGTFCILGGEHEMFWAFDRLFKYDITTSLKHLRLDAHDDFDIKVTIKGI-----DGHVLSNKYLSPPTVFLAPA |
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General information:
TITO was launched using:
| RESULT:
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Template: 1JS8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -74600 for 2119 contacts (-35.2/contact) +
2D Compatibility (PS) -30212 + (NN) -7931 + (LL) 684
1D Compatibility (HY) -7200 + (ID) 1800
Total energy: -121059.0 ( -57.13 by residue)
QMean score : 0.030
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