Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | -------------------------------MGPNAVELTTDQAWCLADVLGAGSYPWVLAITPPYSDH--SQRSAFLAAQSAELTRMGVVNSA---GAVDPRVAQWITTVCRA-TQWLDLRFVSGPGDL-LRGMVARRSEETVVALRNAQLVTFTAMDIGHQHALVPVLTAGLSGRKPARFDDFALPAAAGARADEQIRN-----------GAPLAEVLEFLGVPPSARPLVESVFDGRRTYVEIVAGEHRDGHRVTTEVG-------------VSIIDTPHGRIL--------------VHPTKAFDGEWISTFTPGSADAI-----AMAVERLTASLPSGSWFPDQPLTRDFDEDAATHREPVLQRRTQKA------------------- |
3OKG Chain:A ((15-412)) | MTEGPYKLPPGWRWVRLGEVCLPTERRDPTKNPSTYFVYVDISAIDSTVGKIVSPKEILGQHAPSRARKVIRSGDVIFATTRPYLKNIALVPPDLDGQICSTGFCVIRANREFAEPEFLFHLCRSDFITNQLTASKMRGTSYPAVTDNDVYNTLIPLPPLEEQRRIVAKVEALMERVREVRRLRAEAQKDTELLMQTALAEVFPHPGADLPPGWRWVRLGEVCDIIMGQSPPSSTYNFEGNGLPFFQGKADFGDLHPTPRIWCSAPQKVARPGDVLISVRAPVGSTNVANLACCIGRGLAALRPRDSLERFWLLYYLHYLEPELSKAITKKDLQNVFIPLPP---LEEQRRIVAYLDQIQQQVAALKRAQAETEAELKRLEQAILDKAFRGDL |
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General information:
TITO was launched using:
| RESULT:
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Template: 3OKG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -73961 for 1857 contacts (-39.8/contact) +
2D Compatibility (PS) -30171 + (NN) 4083 + (LL) -44
1D Compatibility (HY) -4000 + (ID) 1300
Total energy: -105393.0 ( -56.75 by residue)
QMean score : 0.066
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