Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | SNAMPFLPDPGEPSPLKVVIAGAGYVGTCLAVTLAGRGAEVVAVDSDPGTVADLRAGRCRLPEPGLAGAVRDLAATGRLTASTSYD-PVGAADVVIVTVGTPTDAGHEMVTDQLVAACEQIAPRLRAGQLVILKSTVSPGTTRTLVAPLLESGGLVHERD-FGLAFCPERLAEGVALAQVRTLPVVVGGCG-----PRSAAAAERFWRSALGVDVRQV-PSAESAEVVKLATNWWIDANVAIANELARYCAVLGVDVLDVIGAANTLPKGSSMVNLLLPGVGVGGSCLTKDPWMAWRDGRDRGVPLRTVETARAVNDDMPRHTAAVIADELVKLGRDRNDTTIAVLGAAFKNDTGDVRNTPVRGVVAALRDSGFRVRIFDPLADPAE---IVARFGTAPA--------ASLDEAVSGAGCLAFLAGHRQFHELDFGALAERVDEPCLVFDGRMHLPPARIRELHRFGFAYRGIGR |
| 2Y0D Chain:A ((8-459)) | --------------SMNLTIIGSGKVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHGDVQFIAVGTPPDE--SADLQYVLAAARNIGRYMTGFKVIVDKSTVPVGTAERVRAAVAEELAKRGGDQMFSVVSNPEFLKEGAAVDDFTRPDRIVIGCDDDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRISFMNELANLADRFGADIEAVRRGIGSDPRIGY--HFLYAGCGYGGSCFPKDVEALIRTADEHGQSLQILKAVSSVNATQKRVLADKIVA---RFGEDLTGRTFAIWGLAFKPNTDDMREAPSRELIAELLSRGARIAAYDPVAQEEARRVIALDLADHPSWLERLSFVDDEAQAARDADALVIVTEWKIFKSPDFVALGRLWKTPV-IFDGRNLYEPETMSE---QGIEYHPIGR |
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General information:
TITO was launched using:
| RESULT:
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Template: 2Y0D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -263186 for 3641 contacts (-72.3/contact) +
2D Compatibility (PS) -46366 + (NN) -12609 + (LL) 1060
1D Compatibility (HY) -20000 + (ID) 6300
Total energy: -347401.0 ( -95.41 by residue)
QMean score : 0.507
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