Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDHSHHMGMSYMDSNSTMQPSHHHPTTSASHSHGGGDSSMMMMPMTFYFGFKNVELLFSGLVINTAGEMAGAFVAVFLLAMFYEGLKIARESLLRKSQVSIRYNSMPVPGPNGTILMETHKTVGQQMLSFPHLLQTVLHIIQVVISYFLMLIFMTYNGYLCIAV--AAGAGTGYFLFSWKKAVVVDITEHCH
3UDC Chain:A ((70-108))
---------------------------------------------------------------------------------------------------------------------------------------NAVRYIIYFLAGASILKLFNIDMTSLLAVAGIGSLAIGFGAQNLVKDMISGFFIIFE
General information:
TITO was launched using:
RESULT:
Template:
3UDC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19428 for 153 contacts (-127.0/contact) +
2D Compatibility (PS) -3856 + (NN) -1471 + (LL) 8236
1D Compatibility (HY) -3200 + (ID) 250
Total energy: -19969.0 ( -130.52 by residue)
QMean score : -0.182
(partial model without unconserved sides chains):
PDB file :
Tito_3UDC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UDC-query.scw
PDB file :
Tito_Scwrl_3UDC.pdb
: