Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAFQDLLGHAGDLWRFQILQTVFLSIFAVATYLHFMLENFTAFIPGHRCWVHILDNDTVSDNDTGALSQDALLRISIPLDSNMRPEKCRRFVHPQWQLLHLNGTFPNTSDADMEPCVDGWVYDRISFSSTIVTEWDLVCDSQSLTSVAKFVFMAGMMVGGILGGHLSDRFGRRFVLRWCYLQVAIVGTCAALAP---------TFLIYCSLRFLSGIAAMSLITNTIMLIAEWAT-HRF----------QAMGITLGMCPSGIAFMTLAGLAFAIRD---------WHILQLVVSVPYFVIFLTSSWLLESARWLIINNKPEEGLKELRKAAHRSGMKNARDTLTLEILKSTMKKELEAAQKKKPSLCEMLHMPNICKRISLLSFTRFANFMAYFGLNLHVQHLGNNV---FLLQTLFGAVILLANCVAPWALKYMNRRASQMLLMFLLA---ICLLAIIFVPQEMQTL-------REVLATLGLGASAL-------------------------------ANTLAFAHGNEVIPTIIRARAMGINATFANIAGALAPLM---MILSVYSPPLPWIIYG--VFPFISGFAFLLLPETRNKPLFDTIQDEKNERKDPREPKQEDPRVEVTQF |
| 4J05 Chain:A ((86-520)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------GCVVGQVMFGVLGDSFGRKFVYGKELILIIVATIFQMSAPSHWDGNRVLTWITICRVFLGIGIGGDYPMSATV--VSDRANIHRRGTLLCFIFANQGWGSFVG---SLVTIVTISGFKHRLKSGHTHDVDKAWRILIGLSLIPAFGTLYQR----------------------------------------------------------------------------------WQEFVAYFSTWNHFRNLLGSMLGWFLVDIAFYGINLNQSVVLA-QIGFAGKTGDVYDKLFQLATGNIIVTALGFLPGYYFTLFLIDIVGRKKLQFMGFIMSGLFLAILAGEIDHIGKGPLLACFTFMQFFFNFGANTTTFIVAAELFPTRIRASAHGISAAAGKCGAILSSLVFNQLKAKIGTSAVLWIFFSTCILGFISTF---LIDETMG---VDPDEKDLEERRAR--------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4J05.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -187256 for 2070 contacts (-90.5/contact) +
2D Compatibility (PS) -29320 + (NN) -4310 + (LL) 20104
1D Compatibility (HY) -24800 + (ID) 4250
Total energy: -229832.0 ( -111.03 by residue)
QMean score : 0.060
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