Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQGARAPRDQGRSPGRMSALGRSSVILLTYVLAATELTCLFMQFSIVPYLSRKLGLDSIAFGYLQTTFGVLQLLGGPVFGRFADQRGARAALTLSFLAALALYLLLAAAS----SPALPGVYLLFASRLPGA--LMHTLPAAQMVITDLSAPEERPAALGRLGLCFGVGVILGSLLGGTLVSA-YGIQCPAILAALATLLGAVLSFTCIPASTKGAKTD--AQ-APLPGGPRASVFDLKA-IA-SLLRLPDVPRIFLVKVASNCPTGLFMVMFSIISMDFFQLEAAQAGYLMSFFGLLQMVTQGLVIGQLSSHFSEEVLLRASVLVFI---VVGLAMAWMSSVFHFCLLVPGLVFSLC--TLNVVTDSMLIKAVSTSDTGTMLGLCASVQPLLR-TLGPTVGGLLYRSFGVPVFGHVQVAINTLVLLVLWRKPMPQRKDKVR |
| 1PW4 Chain:A ((37-427)) | -------------------------------GYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIA-----VMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKND---------TAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPG-TLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1PW4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -336164 for 2973 contacts (-113.1/contact) +
2D Compatibility (PS) -36589 + (NN) -11619 + (LL) 1976
1D Compatibility (HY) -16400 + (ID) 2250
Total energy: -401046.0 ( -134.90 by residue)
QMean score : 0.197
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