Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLRWLRDFVLPTAACQDAEQPTRYETLFQALDRNGDGVVDIGELQEGLRNLGIPLGQDAEEKIFTTGDVNKDGKLDFEEFMKYLKDHEKKMKLAFKSLDKNNDGKIEASEIVQSLQTLGLTISEQQAELILQSIDVDGTMTVDWNEWRDYFLFNPVTDIEEIIRFWKHSTGIDIGDSLTIPDEFTEDEKKSGQWWRQLLAGGIAGAVSRTSTAPLDRLKIMMQ------VHGSKSDKMN-IFGGFRQMVKEGGIRSLWRGNGTNVIKIAPETAVKFWAYEQYKKLL----TEEGQKIGTFERFISGSMAGATAQTFIYPMEVMKTRLAV----GKTGQYSGIYDCAKKILKHEGLGAFYKGYVPNLLGIIPYAGIDLAVYELLKSYWLDNFAKDSVNPGVMVLLGCGALSSTCGQLASYPLALVRTRMQAQAMLEG-SPQLN-MVGLFRRIISKEGIPGLYRGITPNFMKVLPAVGISYVVYENMKQTLGVTQK |
| 4C9J Chain:A ((30-316)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NFLMGGVSAAIAKTAASPIERVKILIQNQDEMIKQGTLDKKYSGIVDCFKRTAKQEGLISFWRGNTANVIRYFPTQALNF-AFKDKIKLMFGFKKEEGYGKWFAGNLASGGAAGALSLLFVYSLDFARTRLAADAKS--ARQFNGLTDVYKKTLKSDGIAGLYRGFMPSVVGIVVYRGLYFGMFDSLK-------------------FLLGWVVTTGASTCSYPLDTVRRRMM---MTSGQAVKYNGAIDCLKKIVASEGVGSLFKGCGANILRSVAGAGV-ISMYDQLQMILFGKKF |
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General information:
TITO was launched using:
| RESULT:
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Template: 4C9J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -53427 for 1794 contacts (-29.8/contact) +
2D Compatibility (PS) -25878 + (NN) 1725 + (LL) 14224
1D Compatibility (HY) -22400 + (ID) 4150
Total energy: -89906.0 ( -50.11 by residue)
QMean score : 0.215
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