Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKTNKIIFIVFIVIFIGLSYRHFTNTDKARMEISSLSSIDVFKFNSFSKFSNDKIGVIYDEEKLSK--FKVIMNSLDTSEGIKKIEVPKDANIESFKYSYHIQPNLKYVEDNNVYDGYFLLYILVGDSEGKSYIIFSGTELSYVLDKNNTNILKEIFLNVKKQQ |
2LN3 Chain:A ((1-83)) | --------------------------------------------------MGLTRTITSQNKEELLEIALKFISQGLDLEVEFDS---TDDKEIEEFERDMEDLAKKTGVQIQKQWQGNKLRIRLKGSLEHHHHHH----------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2LN3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 6986 for 514 contacts (13.6/contact) +
2D Compatibility (PS) -8987 + (NN) -3221 + (LL) 6800
1D Compatibility (HY) 1200 + (ID) 800
Total energy: 1978.0 ( 3.85 by residue)
QMean score : 0.044
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