Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADCAAHDESPGNNVVDISVPPTTD
1OIW Chain:A ((26-191))
YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY--------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1OIW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107442 for 1322 contacts (-81.3/contact) +
2D Compatibility (PS) -18551 + (NN) -9979 + (LL) 1384
1D Compatibility (HY) -23200 + (ID) 8050
Total energy: -165838.0 ( -125.44 by residue)
QMean score : 0.502
(partial model without unconserved sides chains):
PDB file :
Tito_1OIW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OIW-query.scw
PDB file :
Tito_Scwrl_1OIW.pdb
: