Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTSVWGKSILALVFTFMCSLAISAASPKDYLYDTKEENGKIISKVVFLQENGLLNKQVRYEFQYNENGKVSEKKAFRWDRTNDEWVPFYQITYQYDDQSGEIKTNYGMWDKKKKNFSLNVQNMIIPSTNYEEIFS
4GKX Chain:A ((141-234))
-------------------------------FFDSFDNDGKKNNPAIVIIGN---NGQIHYDHQ--NDGASQALASCQRDFRNKPYPVRAKITYYQNTLTVMINNGF-TPDKNDYEFCAKVENMIIPAQGH-----
General information:
TITO was launched using:
RESULT:
Template:
4GKX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 36789 for 573 contacts (64.2/contact) +
2D Compatibility (PS) -9942 + (NN) -2422 + (LL) 3184
1D Compatibility (HY) -1600 + (ID) 1200
Total energy: 24809.0 ( 43.30 by residue)
QMean score : 0.113
(partial model without unconserved sides chains):
PDB file :
Tito_4GKX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GKX-query.scw
PDB file :
Tito_Scwrl_4GKX.pdb
: