Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---------PYLKEKSSATVYFQTVKHNNIRDLVRRCITRTSQVLVILMDVFTDVE-IFCDILEAANKRGVFVCVLLDQGGVKLFQEMCDKVQISDSHLKNISIRSV----E-GEIYCAKSGRKFAGQIREKFIISDWRFVLSGSYSFTWLCGHVHRNILS-KFTGQAVELFDEEFRHLYASSKPVMGLKSP
1VR8 Chain:A ((5-141))
KIHHHHHHPPEAYSLDTAIFVLETRDY------------RLSDVKEI--DSYGDVEMKGKVAVFETEYGPVFLYVYKGEEAKKIWKKLNGRV----------SIRSVLDLPNMGKFSTVSNGKKIVAWWRKN-----WLFIVEGKNGVEEFVKHVYRVYEEMKQ----------------------------
General information:
TITO was launched using:
RESULT:
Template:
1VR8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78893 for 839 contacts (-94.0/contact) +
2D Compatibility (PS) -12517 + (NN) -1835 + (LL) 4376
1D Compatibility (HY) -5600 + (ID) 1600
Total energy: -96069.0 ( -114.50 by residue)
QMean score : 0.218
(partial model without unconserved sides chains):
PDB file :
Tito_1VR8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VR8-query.scw
PDB file :
Tito_Scwrl_1VR8.pdb
: