Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GFDPEKAQCCLVENGQILTHGSGGKGYGLASTGVTSGCYQWKFYIVKENRGNEGTC-VGVSRWPVHDFNHR----TTSDMWLYRAYSGNLYHN--GEQTLTLSSFTQGDFITC------VLDMEARTISFGKNGEEPKLAFEDVDAAELYPCVMFYSSNPGEKVKICDMQMR
3EK9 Chain:A ((72-192))
--------------------------------GYSRGLHAWEISWPLEQRGTHAVVGVATALAPLQADHYAALLGSNSESWGWDIGRGKLYHQSK---APQYPAG---EQLVVPERLLVVLDMEEGTLGYSIGGTYLGPAFRGLKGRTLYPSV-------------------
General information:
TITO was launched using:
RESULT:
Template:
3EK9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -59677 for 616 contacts (-96.9/contact) +
2D Compatibility (PS) -11044 + (NN) -2402 + (LL) 1996
1D Compatibility (HY) -4400 + (ID) 1350
Total energy: -76877.0 ( -124.80 by residue)
QMean score : 0.341
(partial model without unconserved sides chains):
PDB file :
Tito_3EK9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3EK9-query.scw
PDB file :
Tito_Scwrl_3EK9.pdb
: