Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGDHAWSFLKDFLAGGVAAAVSKTAVAPIERVKLLLQVQ-HASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQLFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAAD--VGKGAAQREFHGLGDCIIKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIFV-SWMIAQSVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGAKAFFKGAWSNVLRGMGGAFVLVLYDEIKKYV |
| 4C9H Chain:B ((24-309)) | --------LIDFLMGGVSAAVAKTAASPIERVKLLIQNQDEMLKQGTLDRKYAGILDCFKRTATQEGVISFWRGNTANVIRYFPTQALNFAFKDKIKAMF--GFKKEEGYAKWFAGNLASGGAAGALSLLFVYSLDYARTRLAADSK-----GARQFNGLIDVYKKTLKSDGVAGLYRGFLPSVVGIVVYRGLYFGMYDSLK------------LASFLLGWVVTTGASTCSYPLDTVRRRMMMTSGQA---VKYDGAFDCLRKIVAAEGVGSLFKGCGANILRGVAGAGVISMYDQLQ--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4C9H.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -75878 for 1997 contacts (-38.0/contact) +
2D Compatibility (PS) -27007 + (NN) 4762 + (LL) 1124
1D Compatibility (HY) -28800 + (ID) 7700
Total energy: -133499.0 ( -66.85 by residue)
QMean score : 0.225
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