Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRGSPGDAERRQRWGRLFEELDSNKDGRVDVHELRQGLARLGGGNPDPGAQQGISSEGDADPDGGLDLEEFSRYLQEREQRLLLMFHSLDRNQDGHIDVSEIQQSFRALGISISLEQAEKILHSMDRDGTMTIDWQEWRDHFLLHSLENVEDVLYFWKHSTVLDIGECLTVPDEFSKQEKLTGMWWKQLVAGAVAGAVSRTGTAPLDRLKVFMQVHAS--KTNRLN-----ILGGLRSMVLEGGIRSLWRGNGINVLKIAPESAIKFMAYEQIKRAILGQQETLH---VQERFVAGSLAGATAQTIIYPMEVLKTRL-----TLRRTG--QYKGLLDCARRILEREGPRAFYRGYLPNVLGIIPYAGIDLAVYETLKNWWLQQYSHDSADPGILVLLACGTISSTCGQIASYPLALVRTRM---QAQASIEGGPQLSMLGLLRHILSQEGMRGLYRGIAPNFMKVIPAVSISYVVYENMKQALGVTSR |
4C9Q Chain:A ((30-305)) | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NFLMGGVSAAIAKTAASPIERVKILIQNQDEMIKQGTLDKKYSGIVDCFKRTAKQEGLISFWRGNTANVIRYFPTQALNFAFKDKIKLMFGFKKE-GYGKWFAGNLASGGAAGALSLLFVYSLDFARTRLAADAKS-----ARQFNGLTDVYKKTLKSDGIAGLYRGFMPSVVGIVVYRGLYFGMFDSLKPL-------------FLASFLLGWVVTTGASTCSYPLDTVRRRMMMTSGQAVKYNGA----IDCLKKIVASEGVGSLFKGCGANILRSVAGAGVISMYDQLQMILFGK--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4C9Q.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -81045 for 1724 contacts (-47.0/contact) +
2D Compatibility (PS) -24798 + (NN) 558 + (LL) 12036
1D Compatibility (HY) -20000 + (ID) 3550
Total energy: -116799.0 ( -67.75 by residue)
QMean score : 0.200
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