Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEHPGMAVMREQGIVVNDAVNEQVAARMKVLAAPDLEVVALLSRGKLLYGVIDDENQPPGSRDIPDNEFRVVLARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAAINAVNVPMEEMLEATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSASVLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV |
1QVI Chain:Z ((85-137)) | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DYMEAFKTFDREGQGFISGAELRHV------LTALGERLSDEDVDEIIKLTDLQEDLEG---------------------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1QVI.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -2240 for 265 contacts (-8.5/contact) +
2D Compatibility (PS) -5420 + (NN) -685 + (LL) 16404
1D Compatibility (HY) -3600 + (ID) 800
Total energy: 3659.0 ( 13.81 by residue)
QMean score : 0.037
|
|
|