Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKMRVYSLLFMMLFALSIGANAQVKFFTDVNSKQI----KTLQVKVAGELISEPYIALGGEEQ-IEINFDGLGSGYTRYAYNVVHCNADWTQSQLSPIEYMNGFQGTTIDDFANSIGTTTQYSNYRLLLPNDDVQFKVSGNYAIQV-----YNEDTPDQIIFTACFSVVEP-----VVNISASVSGNTDIDTNQSHQQVSFNINNKNFPITYPQTDLKIFVYQDNRRDNAVTDLQPMSILENQISYTYNRNLIFPAGNEYRRMEFLSNKYNGMHVENISFHNPYYNVELMTDYRRDKGTYQYDQDQDGRFFIRCSDCNDPDT-EADYYIVHFT-LACDPLPDGSVYL-NGELFNNVLDEKSKMGYNFETKQYEKAVLLKQGSYNYQYLFVPTGSSVGQTGPIEGNYYQTQNEYSIYVYYRPMGARYDRLIGVTTVRNEMQVF |
| 4FDW Chain:A ((21-401)) | --ASLEDFSIEQLPAKTIYALGENIDLTGLNVTGKYDDGKQRPVKVTSEQISGFSSSVPVDKQEVTITIEG---------------KQKSFSVHISPVRVENGVLTEILKGYNEIILPNSVKSIPKDAFRNSQIA-KVVLNEGLKSIGDMAFFNSTVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGSQAFLK--------TSQLKTIEIPENV--STIGQEAFRESGITTVKLP------NG--VTNIASRAFYYCPEL-------AEVTTYGSTFN----------DDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQLTI--------PANVTQINFSAFNNTGIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVEKYKNANGWRDFTNKITTF |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4FDW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -7580 for 2837 contacts (-2.7/contact) +
2D Compatibility (PS) -37330 + (NN) -255 + (LL) 3336
1D Compatibility (HY) -8400 + (ID) 3500
Total energy: -53729.0 ( -18.94 by residue)
QMean score : 0.019
|
|
|